IPCMaster IPCMaster

What is Windows Malicious Software Removal Tool

Learn and discover all about the Windows Malicious Software Removal tool and how to run it for common infections.

Last updated: 2025-07-21 07:03:20

windows malicious software removal-tool x64

One prominent reason your computer is slow and sluggish is the high CPU usage caused by MRT.exe. Most people don’t even know why it is on their PCs and misunderstand it as a virus.

Simply put, the Windows Malicious Software Removal tool is a post-infection scanner that runs in the background and detects common infections once every month. However, running this utility program has users facing many issues, such as privacy, lack of control over security, and degraded performance.   

Want to know more about the Windows Malicious Software Removal Tool, how to run it, and ways to fix its high memory usage issue? Keep reading.  

What is the Windows Malicious Software Removal Tool?

what is windows malicious software removal

Windows Malicious Software Removal Tool, MRT or MSRT, is a Microsoft scanner that removes harmful programs from your computers.

Present in the System32 folder directory, MRT scans the host computer once every month automatically for specific and widespread malware and tries to eliminate it. This program is available on Windows 10, Windows Server 2019, Windows Server 2016, Windows 8.1, Windows Server 2012 R2, Windows 8.1, and Windows 7.

MRT is technically different from anti-viruses, as it does not offer ongoing protection and removes harmful programs from an infected computer. It also cannot cater to active malicious programs. Hence, you must download Windows Defender and other third-party, up-to-date antivirus products to remove active viruses and malware from the PC.    

How Do I Run the Windows Malicious Software Removal Tool?

The Windows Malicious Software Removal tool runs automatically once every month if your Windows Automatic Updates are activated. You can also download and scan it manually for common infections. Here is how.

Step 1: Run the MRT Scanner

run windows malicious software removal
windows malicious removal tool running

Step 2: Perform the Scan

run malicious software removal tool
Tips
Tips: The MSRT lets you select specific folders and drivers you want to scan in a customized scan, saving extra time.
windows msrt tool scanning
windows malicious removal tool scan

Microsoft Windows Malicious Software Removal Tool High CPU: How to Fix It?

The Windows Malicious Removal Tool penetrates the system deeply and scans for high-profile security threats. This process uses considerable computer resources, including CPU and disk, slowing down the system’s speed. The effect doubles when your PC is set to automated MSRT scanning.  

So, if you have recently experienced sluggish responses due to MSRT causing high CPU and memory usage, here are two quick fixes.

Method 1: End the MSRT.exe Processes

The most basic and effective way to deal with MSRT consuming memory is to end its related processes. Here is how it goes. However, this method only temporarily fixes the CPU usage problem.

Step 1: Access the Task Manager

windows malicious software removal x64

Step 2: End MSRT Background Processes

windows malicious software removal quit
Tips
Tips: Go to the Startup tab and see if the MSRT.exe is running in the background. If yes, disable it from the list of installed apps.

Method 2: Delete the MSRT.exe Files

The Windows Malicious Removal Tool is meant to be in the System32 folder. And, if it is present outside this folder, you must delete it, as it takes up a lot of disk space and degrades the PC’s performance.

Step 1: Locate the MRT.exe File

disable windows malicious software removal

Step 2: Delete the MRT.exe Files Other than System32

quit windows malicious removal tool

Pro Tip: Manually deleting background processes and associated files is time-consuming and hectic. Instead, third-party uninstallers like Master Uninstaller can help you eliminate all program residues and traces from the PC within minutes. Simply visit the dashboard, locate the program, and delete it. 

How to Get Rid of the Windows Malicious Software Removal Tool?

The Windows Malicious Software Removal tool is often associated with security and performance issues, including;

Given these recurring issues, many want to disable the MSRT from their computer and employ advanced security software. Here are three tried-and-tested methods for disabling the MRT utility program.

Method 1: Using a Restore Point

Windows usually automatically creates a restore point before installing the updates, but this is not always true. So, open your system restore to check if a restore point was created before downloading the MSRT to your computer. If yes, it lets you undo the changes made by the malicious software removal program.

Here is how you can check a restore point.

windows malicious removal tool update
Tips
Tips: If you are to manually download the Windows Malicious Software Removal tool, create a restore point beforehand by visiting the System Restore menu. It can help you revert the computer to its previous state if something goes wrong.

Method 2: Delete MSRT Manually

Another way to remove the Windows MRT is by manually deleting it from the PC. However, this method does not eliminate the tool entirely, as Windows might reinstall it with the new updates.

Step 1: Locate the MRT.exe Folder

uninstall windows malicious removal tool

Step 2: Delete MRT from System32 Directory

windows msrt tool deletion

Method 3: Disable MRT from the Registry Editor

Users can also prevent Windows from installing MRT using the registry editor, though it’s not guaranteed. The Windows updates might still reinstall it, and you must uninstall it again manually. Here is how it goes.

Step 1: Locate MRT from the Registry

windows malicious software removal x64

Step 2: Create an MRT Registry

disable windows malicious software removal
disabling windows malicious removal tool
windows malicious removal tool delete

Step 3: Restart Your PC

FAQs

Q: How to Run Windows MRT?
To run MRT manually, download it from Microsoft’s official website. Once downloaded, open the scanner and click Next > Quick Scan > Next. The program will start scanning for infections. Finally, view the Detailed Results and click Finish to complete the process.
Q: Is Windows MRT Good?
Windows MRT is a post-infection scanning program that detects and deletes malware, viruses, and infections from your PC. However, it does not account for spyware or active viruses and lacks ongoing protection. Hence, you must employ third-party anti-malware or Windows Defender for up-to-date, constant protection.  
Q: How to Remove Windows Malicious Software Tool?
Delete the Windows Malicious Software Removal Tool from the System32 folder. To do this, visit File Explorer and type MRT.exe in the search box. Right-click the folder and click Delete. However, Windows might still reinstall the program with updates.  
Q: How to Prevent Windows from Downloading the MRT Automatically?
To prevent Windows from downloading the MRT automatically, visit the Registry Entry and locate the HKEY_LOCAL_MACHINE folder. Select Software > Policies > Microsoft > MRT, and make a new 32-bit DWORD key. Name it DontOfferThroughWUAU and set its value to 1, and you’re done. 
Q: Does MSRT Run Automatically?
Yes, Windows automatically runs as part of Windows updates and scans monthly for malware and common infections. Hence, it always runs in the background until it detects an infected folder.

Final Thoughts

Windows Malicious Software Removal Tool was introduced in 2005 as a post-infection scanning program that protects your system from viruses and malware. However, its risks outweigh the benefits. Users constantly report degraded performance and security threats with this tool, compelling them to look for alternatives.

Thankfully, you can manually disable it from the computer and prevent Windows from reinstalling it to a certain extent, if not entirely. If you face the same issues, opting for better security alternatives like Windows Defender and third-party uninstaller apps is better.

Master Uninstaller
  • check

    Simple and Practical: Easily uninstall unwanted software.

  • check

    Thorough Cleanup: Completely remove residual files.

  • check

    Blacklist Protection: Identify and block malware and adware.

Free download

You May Also Like